PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G13690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 338aa    MW: 38422 Da    PI: 10.4826
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G13690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-15655148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd +l+ +v+q+G++ W++++ +m+  + R +k+c +rw +yl
  LPERR12G13690.1  6 RQRWRPEEDAILLSYVRQYGPREWNLVSTRMNaaLDRDAKSCLERWKNYL 55
                     89**********************************************97 PP

2Myb_DNA-binding34.16.3e-1161105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T +E+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  LPERR12G13690.1  61 KGSLTDDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 105
                      57789*****************.*********.*****999999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.42155IPR017930Myb domain
SMARTSM007172.8E-12557IPR001005SANT/Myb domain
SuperFamilySSF466891.11E-206100IPR009057Homeodomain-like
CDDcd001672.94E-7855No hitNo description
Gene3DG3DSA:1.10.10.603.5E-20862IPR009057Homeodomain-like
PfamPF139215.2E-14970No hitNo description
PROSITE profilePS5129422.39156110IPR017930Myb domain
SMARTSM007171.4E-960108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-1563104IPR009057Homeodomain-like
CDDcd001671.03E-565106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQMRERQRWR PEEDAILLSY VRQYGPREWN LVSTRMNAAL DRDAKSCLER WKNYLRPGIK  60
KGSLTDDEQR LVIRLQAKHG NKWKKIAAEV PGRTAKRLGK WWEVFKEKQQ REIRDSRRPP  120
PEPSPDERGR YDWLLENFAE KIVKERPVAV ATVAPLLMAT PMLPPWMSSP APPPPSPSVT  180
LSLASSAAAA AAAPPSVPPP SAPAPWLQPP HQPPPPPSGE AIGELVECVR ELEEGHRAWA  240
AQRKEAAWRL KRVELQLESE RAARRREAAE EFEAKVRALR EEQAAAVERA DAEFRDRMAG  300
LRRDAEIKEQ KMAEQWAAKH ARLAKFLDHF AAGGAGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-159103798MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579268.11e-157PREDICTED: protein rough sheath 2
RefseqXP_014758382.11e-157PREDICTED: protein rough sheath 2
SwissprotQ94IB11e-143RS2_ORYSJ; Protein rough sheath 2 homolog
TrEMBLA0A0D9Y0M50.0A0A0D9Y0M5_9ORYZ; Uncharacterized protein
STRINGBRADI4G03970.11e-157(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.12e-66MYB family protein